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1

Consumption Patterns of Fuelwood in Rural Households of Dolakha District, Nepal: Reflections from Community Forest User Groups

Kandel, Pratikshya, Chapagain, Prem Sagar, Sharma, Lila Nath, Vetaas, Ole Reidar

Journal:

Small-scale Forestry

Year:

2016

Language:

english

File:

PDF, 419 KB

english, 2016

2

Conformational Changes in Marburg Virus VP40 upon Plasma Membrane Association

Bhattarai, Nisha, Chapagain, Prem P., Gerstman, Bernard S.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 39 KB

english, 2018

3

Tourism Development in Upper Manang Valley of Annapurna Region

Subedi, Bhim P, Chapagain, Prem Sagar

Journal:

Nepal Tourism and Development Review

Year:

2013

Language:

english

File:

PDF, 321 KB

english, 2013

4

Farmers’ understanding of climate change in Nepal Himalayas: important determinants and implications for developing adaptation strategies

Paudel, Basanta, Zhang, Yili, Yan, Jianzhong, Rai, Raju, Li, Lanhui, Wu, Xue, Chapagain, Prem Sagar, Khanal, Narendra Raj

Journal:

Climatic Change

Year:

2019

Language:

english

File:

PDF, 802 KB

english, 2019

5

Hydrogen Bond Flexibility Correlates with Stokes Shift in mPlum Variants

Konold, Patrick, Regmi, Chola K., Chapagain, Prem P., Gerstman, Bernard S., Jimenez, Ralph

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 2.11 MB

english, 2014

6

The Role of the Interdomain Interactions on RfaH Dynamics and Conformational Transformation

GC, Jeevan B., Gerstman, Bernard S, Chapagain, Prem P.

Journal:

Journal of Physical Chemistry B

Year:

2015

Language:

english

File:

PDF, 1.77 MB

english, 2015

7

Detection of lipid-induced structural changes of the Marburg virus matrix protein VP40 using hydrogen/deuterium exchange-mass spectrometry

Wijesinghe, Kaveesha J., Urata, Sarah, Bhattarai, Nisha, Kooijman, Edgar E., Gerstman, Bernard S., Chapagain, Prem P., Li, Sheng, Stahelin, Robert V.

Journal:

Journal of Biological Chemistry

Year:

2017

Language:

english

File:

PDF, 8.67 MB

english, 2017

8

Water as “Time-Substance”: The Hydrosocialities of Climate Change in Nepal

Clark, Julian, Gurung, Praju, Chapagain, Prem Sagar, Regmi, Santosh, Bhusal, Jagat K., Karpouzoglou, Timothy, Mao, Feng, Dewulf, Art

Journal:

Annals of the American Association of Geographers

Year:

2017

Language:

english

File:

PDF, 1.26 MB

english, 2017

9

Status of natural springs in the Melamchi region of the Nepal Himalayas in the context of climate change

Chapagain, Prem Sagar, Ghimire, Motilal, Shrestha, Shova

Journal:

Environment, Development and Sustainability

Year:

2017

Language:

english

File:

PDF, 5.13 MB

english, 2017

10

Genetic basis of hearing loss in Spanish, Hispanic and Latino populations

Mittal, Rahul, Patel, Amit P., Nguyen, Desiree, Pan, Debbie R., Jhaveri, Vasanti M., Rudman, Jason R., Dharmaraja, Arjuna, Yan, Denise, Feng, Yong, Chapagain, Prem, Lee, David J., Blanton, Susan H., L

Journal:

Year:

2018

Language:

english

File:

PDF, 923 KB

english, 2018

11

Farmers’ understanding of climate change in Nepal Himalayas: important determinants and implications for developing adaptation strategies

Paudel, Basanta, Zhang, Yili, Yan, Jianzhong, Rai, Raju, Li, Lanhui, Wu, Xue, Chapagain, Prem Sagar, Khanal, Narendra Raj

Journal:

Climatic Change

Year:

2019

File:

PDF, 802 KB

2019

12

Changing forest coverage and understanding of deforestation in Nepal Himalayas

Chapagain, Prem Sagar, Aase, Tor H.

Journal:

Geographical Journal of Nepal

Year:

2020

File:

PDF, 585 KB

2020

13

Building climate change resilience by using a versatile toolkit for local governments and communities in rural Himalaya

Heath, Lance C., Tiwari, Prakash, Sadhukhan, Bedoshruti, Tiwari, Sunandan, Chapagain, Prem, Xu, Tingbao, Li, Geraldine, Ailikun,, Joshi, Bhagwati, Yan, Jianzhong

Journal:

Environmental Research

Year:

2020

File:

PDF, 1.54 MB

2020

14

Removal of kinetic traps and enhanced protein folding by strategic substitution of amino acids in a model α-helical hairpin peptide

Prem P. Chapagain, Bernard S. Gerstman

Journal:

Year:

2006

Language:

english

File:

PDF, 434 KB

english, 2006

15

Kinetics of peptide secondary structure conversion during amyloid β-protein fibrillogenesis

Timothy Steckmann, Zubair Awan, Bernard S. Gerstman, Prem P. Chapagain

Journal:

Journal of Theoretical Biology

Year:

2012

Language:

english

File:

PDF, 583 KB

english, 2012

16

Stabilization of Native and Non-native Structures by Salt Bridges in a Lattice Model of the GCN4 Leucine Dimer

Liu, Yanxin, Chapagain, Prem P., Gerstman, Bernard S.

Journal:

Journal of Physical Chemistry B

Year:

2010

Language:

english

File:

PDF, 1.73 MB

english, 2010

17

Exploring the Diffusion of Molecular Oxygen in the Red Fluorescent Protein mCherry Using Explicit Oxygen Molecular Dynamics Simulations

Regmi, Chola K., Bhandari, Yuba R., Gerstman, Bernard S., Chapagain, Prem P.

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 3.29 MB

english, 2013

18

Exploring Structural and Optical Properties of Fluorescent Proteins by Squeezing: Modeling High-Pressure Effects on the mStrawberry and mCherry Red Fluorescent Proteins

Laurent, Adele D., Mironov, Vladimir A., Chapagain, Prem P., Nemukhin, Alexander V., Krylov, Anna I.

Journal:

Journal of Physical Chemistry B

Year:

2012

Language:

english

File:

PDF, 3.45 MB

english, 2012

19

Temperature Dependence of the Protein-Chromophore Hydrogen Bond Dynamics in the Far-Red Fluorescent Protein Mplum

Regmi, Chola K., Chapagain, Prem P., Gerstman, Bernard S.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 39 KB

english, 2014

20

Molecular Dynamics Investigations of the α-Helix to β-Barrel Conformational Transformation in the RfaH Transcription Factor

GC, Jeevan B., Bhandari, Yuba R., Gerstman, Bernard S., Chapagain, Prem P.

Journal:

Journal of Physical Chemistry B

Year:

2014

Language:

english

File:

PDF, 3.00 MB

english, 2014

21

Innovation as an Expression of Adaptive Capacity to Change in Himalayan Farming

Aase, Tor Halfdan, Chapagain, Prem Sagar, Tiwari, Prakash Chandra

Journal:

Mountain Research and Development

Year:

2013

Language:

english

File:

PDF, 288 KB

english, 2013

22

Excluded volume entropic effects on protein unfolding times and intermediary stability

Chapagain, Prem P., Gerstman, Bernard S.

Journal:

The Journal of Chemical Physics

Year:

2004

Language:

english

File:

PDF, 354 KB

english, 2004

23

Microfluidics-based selection of red-fluorescent proteins with decreased rates of photobleaching

Dean, Kevin M., Lubbeck, Jennifer L., Davis, Lloyd M., Regmi, Chola K., Chapagain, Prem P., Gerstman, Bernard S., Jimenez, Ralph, Palmer, Amy E.

Journal:

Integrative Biology

Year:

2015

Language:

english

File:

PDF, 1.99 MB

english, 2015

24

Fluorescent protein barrel fluctuations and oxygen diffusion pathways in mCherry

Chapagain, Prem P., Regmi, Chola K., Castillo, William

Journal:

The Journal of Chemical Physics

Year:

2011

Language:

english

File:

PDF, 1.29 MB

english, 2011

25

Lattice model simulations of the effects of the position of a peptide trigger segment on helix folding and dimerization

Bhandari, Yuba R., Chapagain, Prem P., Gerstman, Bernard S.

Journal:

The Journal of Chemical Physics

Year:

2012

Language:

english

File:

PDF, 1003 KB

english, 2012

26

Self-organization in protein folding and the hydrophobic interaction

Gerstman, Bernard S., Chapagain, Prem P.

Journal:

The Journal of Chemical Physics

Year:

2005

Language:

english

File:

PDF, 389 KB

english, 2005

27

Structural propensities and entropy effects in peptide helix-coil transitions

Chemmama, Ilan E., Pelea, Adam Colt, Bhandari, Yuba R., Chapagain, Prem P., Gerstman, Bernard S.

Journal:

Physical Review E

Year:

2012

Language:

english

File:

PDF, 507 KB

english, 2012

28

Free-energy landscapes and thermodynamic parameters of complex molecules from nonequilibrium simulation trajectories

Chapagain, Prem P., Gerstman, Bernard S., Bhandari, Yuba R., Rimal, Dipak

Journal:

Physical Review E

Year:

2011

Language:

english

File:

PDF, 615 KB

english, 2011

29

Finite size scaling of structural transitions in a simulated protein with secondary and tertiary structure

Chapagain, Prem P., Gerstman, Bernard S.

Journal:

The Journal of Chemical Physics

Year:

2003

Language:

english

File:

PDF, 414 KB

english, 2003

30

Ca 2+ and Mg 2+ modulate conformational dynamics and stability of downstream regulatory element antagonist modulator

Pham, Khoa, Dhulipala, Gangadhar, Gonzalez, Walter G., Gerstman, Bernard S., Regmi, Chola, Chapagain, Prem P., Miksovska, Jaroslava

Journal:

Protein Science

Year:

2015

Language:

english

File:

PDF, 1.57 MB

english, 2015

31

Pairwise amino acid secondary structural propensities

Chemmama, Ilan E., Chapagain, Prem P., Gerstman, Bernard S.

Journal:

Physical Review E

Year:

2015

Language:

english

File:

PDF, 681 KB

english, 2015

32

Publisher's Note: Pairwise amino acid secondary structural propensities [Phys. Rev. E 91 , 042709 (2015)]

Chemmama, Ilan E., Chapagain, Prem P., Gerstman, Bernard S.

Journal:

Physical Review E

Year:

2015

Language:

english

File:

PDF, 294 KB

english, 2015

33

Publisher’s Note: “Lattice model simulation of interchain protein interactions and the folding dynamics and dimerization of the GCN4 Leucine zipper” [J. Chem. Phys. 128, 045106 (2008)]

Liu, Yanxin, Chapagain, Prem P., Parra, Jose L., Gerstman, Bernard S.

Journal:

The Journal of Chemical Physics

Year:

2008

Language:

english

File:

PDF, 32 KB

english, 2008

34

The trigger sequence in the GCN4 leucine zipper: α-helical propensity and multistate dynamics of folding and dimerization

Chapagain, Prem P., Liu, Yanxin, Gerstman, Bernard S.

Journal:

The Journal of Chemical Physics

Year:

2008

Language:

english

File:

PDF, 658 KB

english, 2008

35

Sampling of states for estimating the folding funnel entropy and energy landscape of a model alpha-helical hairpin peptide

Chapagain, Prem P., Parra, Jose L., Gerstman, Bernard S., Liu, Yanxin

Journal:

The Journal of Chemical Physics

Year:

2007

Language:

english

File:

PDF, 878 KB

english, 2007

36

On the Origin of the Extended Stoke's Shifts in Fluorescent Proteins

Chapagain, Prem, Regmi, Chola, Gerstman, Bernard

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 60 KB

english, 2016

37

Interdomain Interactions and the Mechanism of Structural Transformation in RfaH

gc, jeevan B., Gerstman, Bernard S., Chapagain, Prem P.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 40 KB

english, 2016

38

Hydrogen Bond Flexibility and Water Dynamics in the Far Red Fluorescent Protein TagRFP675

Chapagain, Prem, Regmi, Chola K., Gerstman, Bernard S.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 40 KB

english, 2015

39

Molecular Structure and Regulation of P2X Receptors With a Special Emphasis on the Role of P2X 2 in the Auditory System

Mittal, Rahul, Chan, Brandon, Grati, M'hamed, Mittal, Jeenu, Patel, Kunal, Debs, Luca H., Patel, Amit P., Yan, Denise, Chapagain, Prem, Liu, Xue Zhong

Journal:

Journal of Cellular Physiology

Year:

2016

Language:

english

File:

PDF, 2.89 MB

english, 2016

40

Direct observation of a 91 bp LacI-mediated, negatively supercoiled DNA loop by atomic force microscope

Fulcrand, Geraldine, Chapagain, Prem, Dunlap, David, Leng, Fenfei

Journal:

Year:

2016

Language:

english

File:

PDF, 882 KB

english, 2016

41

Intricate functions of matrix metalloproteinases in physiological and pathological conditions

Mittal, Rahul, Patel, Amit P., Debs, Luca H., Nguyen, Desiree, Patel, Kunal, Grati, M'hamed, Mittal, Jeenu, Yan, Denise, Chapagain, Prem, Liu, Xue Zhong

Journal:

Journal of Cellular Physiology

Year:

2016

Language:

english

File:

PDF, 2.50 MB

english, 2016

42

Adapting in the Shadow of Annapurna: A Climate Tipping Point

Konchar, Katie M., Staver, Ben, Salick, Jan, Chapagain, Arjun, Joshi, Laxmi, Karki, Sita, Lo, Smriti, Paudel, Asha, Subedi, Prem, Ghimire, Suresh K.

Journal:

Journal of Ethnobiology

Year:

2015

Language:

english

File:

PDF, 1.60 MB

english, 2015

43

Interdomain salt-bridges in the Ebola virus protein VP40 and their role in domain association and plasma membrane localization

GC, Jeevan B., Johnson, Kristen A., Husby, Monica L., Frick, Cary T., Gerstman, Bernard S., Stahelin, Robert V., Chapagain, Prem P.

Journal:

Protein Science

Year:

2016

Language:

english

File:

PDF, 3.13 MB

english, 2016

44

Fluorescence from Multiple Chromophore Hydrogen-Bonding States in the Far-Red Protein TagRFP675

Konold, Patrick E., Yoon, Eunjin, Lee, Junghwa, Allen, Samantha L., Chapagain, Prem P., Gerstman, Bernard S., Regmi, Chola K., Piatkevich, Kiryl D., Verkhusha, Vladislav V., Joo, Taiha, Jimenez, Ralph

Journal:

The Journal of Physical Chemistry Letters

Year:

2016

Language:

english

File:

PDF, 1.81 MB

english, 2016

45

Characterization of molecular interactions between E. coli RNA polymerase and topoisomerase I by molecular simulations

Tiwari, Purushottam Babu, Chapagain, Prem P., Banda, Srikanth, Darici, Yesim, Üren, Aykut, Tse-Dinh, Yuk-Ching

Journal:

Year:

2016

Language:

english

File:

PDF, 976 KB

english, 2016

46

Cover Image, Volume 231, Number 8, August 2016

Mittal, Rahul, Chan, Brandon, Grati, M'hamed, Mittal, Jeenu, Patel, Kunal, Debs, Luca H., Patel, Amit P., Yan, Denise, Chapagain, Prem, Liu, Xue Zhong

Journal:

Journal of Cellular Physiology

Year:

2016

File:

PDF, 436 KB

2016

47

The Ebola virus protein VP40 hexamer enhances the clustering of PI(4,5)P 2 lipids in the plasma membrane

GC, Jeevan B., Gerstman, Bernard S., Stahelin, Robert V., Chapagain, Prem P.

Journal:

Physical Chemistry Chemical Physics

Year:

2016

Language:

english

File:

PDF, 3.88 MB

english, 2016

48

Structures of the kinetically trapped i-motif DNA intermediates

Garabedian, Alyssa, Butcher, David, Lippens,, Jennifer L, Miksovska, Jaroslava, Chapagain, Prem, Fabris, Daniele, Ridgeway, Mark E., Park, Melvin A., Fernandez-Lima, Francisco

Journal:

Physical Chemistry Chemical Physics

Year:

2016

Language:

english

File:

PDF, 1.92 MB

english, 2016

49

Exploring Molecular Interactions between Escherichia coli RNA Polymerase and Topoisomerase I by Molecular Simulations

Tiwari, Purushottam, Chapagain, Prem, Banda, Srikanth, Darici, Yesim, Tse-Dinh, Yuk-Ching, Üren, Aykut

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 43 KB

english, 2017

50

Pi(4,5)P 2 Clustering by the Ebola Virus Matrix Protein VP40

GC, Jeevan B., Gerstman, Bernard S., Chapagain, Prem P.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 45 KB

english, 2017